назад
TBLASTN 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= GLMU ECOLI
(456 letters)
Database: pa
529 sequences; 6,296,083 total letters
Searching..done
Score E
Sequences producing significant alignments: (bits) Value
embl|AE004967|AE004967 Pseudomonas aeruginosa PAO1, section 528 ... 495 e-141
embl|AE004784|AE004784 Pseudomonas aeruginosa PAO1, section 345 ... 43 1e-04
embl|AE004496|AE004496 Pseudomonas aeruginosa PAO1, section 57 o... 35 0.031
embl|AE004783|AE004783 Pseudomonas aeruginosa PAO1, section 344 ... 33 0.12
embl|AE004749|AE004749 Pseudomonas aeruginosa PAO1, section 310 ... 32 0.26
embl|AE004521|AE004521 Pseudomonas aeruginosa PAO1, section 82 o... 31 0.44
embl|AE004929|AE004929 Pseudomonas aeruginosa PAO1, section 490 ... 29 1.3
embl|AE004638|AE004638 Pseudomonas aeruginosa PAO1, section 199 ... 29 1.3
embl|AE004853|AE004853 Pseudomonas aeruginosa PAO1, section 414 ... 28 2.2
embl|AE004764|AE004764 Pseudomonas aeruginosa PAO1, section 325 ... 28 2.2
embl|AE004659|AE004659 Pseudomonas aeruginosa PAO1, section 220 ... 28 2.2
embl|AE004602|AE004602 Pseudomonas aeruginosa PAO1, section 163 ... 28 2.2
embl|AE004561|AE004561 Pseudomonas aeruginosa PAO1, section 122 ... 28 2.2
embl|AE004857|AE004857 Pseudomonas aeruginosa PAO1, section 418 ... 28 2.9
embl|AE004480|AE004480 Pseudomonas aeruginosa PAO1, section 41 o... 28 2.9
embl|AE004966|AE004966 Pseudomonas aeruginosa PAO1, section 527 ... 28 3.7
embl|AE004606|AE004606 Pseudomonas aeruginosa PAO1, section 167 ... 28 3.7
embl|AE004446|AE004446 Pseudomonas aeruginosa PAO1, section 7 of... 28 3.7
embl|AE004709|AE004709 Pseudomonas aeruginosa PAO1, section 270 ... 27 4.9
embl|AE004509|AE004509 Pseudomonas aeruginosa PAO1, section 70 o... 27 4.9
embl|AE004835|AE004835 Pseudomonas aeruginosa PAO1, section 396 ... 27 6.4
embl|AE004790|AE004790 Pseudomonas aeruginosa PAO1, section 351 ... 27 6.4
embl|AE004482|AE004482 Pseudomonas aeruginosa PAO1, section 43 o... 27 6.4
embl|AE004947|AE004947 Pseudomonas aeruginosa PAO1, section 508 ... 27 8.4
embl|AE004909|AE004909 Pseudomonas aeruginosa PAO1, section 470 ... 27 8.4
embl|AE004720|AE004720 Pseudomonas aeruginosa PAO1, section 281 ... 27 8.4
embl|AE004545|AE004545 Pseudomonas aeruginosa PAO1, section 106 ... 27 8.4
>embl|AE004967|AE004967 Pseudomonas aeruginosa PAO1, section 528 of
529 of the complete genome.
Length = 16662
Score = 495 bits (1274), Expect = e-141
Identities = 255/453 (56%), Positives = 325/453 (71%), Gaps = 1/453 (0%)
Frame = -3
Query: 5 AMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQ 64
++ +VILAAG+GTRM S LPKVLH +AGK M+ HVID A +L +H+V GHG DL+++
Sbjct: 9430 SLEIVILAAGQGTRMRSALPKVLHPIAGKPMLGHVIDCARQLQPERIHVVIGHGADLVRE 9251
Query: 65 ALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQG 124
+ D+LN+VLQAEQLGTGHA+ QA PF + D+ +L+LYGDVPLI ++TLQRL
Sbjct: 9250 RMAADDLNFVLQAEQLGTGHAVAQALPFLSADQ-VLILYGDVPLIQLDTLQRLLAQVTPD 9074
Query: 125 GIGLLTVKLDDPTGYGRITREN-GKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRW 183
+ LLTV + DPTGYGRI R++ G V IVEHKDAT QRQI EINTGIL G + W
Sbjct: 9073 QLSLLTVDMLDPTGYGRIVRDDQGAVQAIVEHKDATPAQRQIGEINTGILAVPGKRLADW 8894
Query: 184 LAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSEQ 243
L +L+N+NAQGEYY+TD+IA+A +G + + P EV+GVN+R+Q ++LER YQ +
Sbjct: 8893 LGRLSNDNAQGEYYLTDVIAMAVGDGLVVASAQPLDAMEVQGVNDRMQQAQLERHYQRLR 8714
Query: 244 AEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVI 303
AE+L+ GV L DP R D+RG ++ GRDV ID NV++EG V + V+IG CVI++SV+
Sbjct: 8713 AEELMRQGVTLLDPQRLDVRGEISVGRDVLIDVNVVLEGRVVIEDDVRIGPNCVIRDSVL 8534
Query: 304 GDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGH 363
I + +E A L GPFARLRPG+ L AHVGNFVE+K ARLG+GSKAGH
Sbjct: 8533 RRGAVIKANSHLEGAELGEGSDAGPFARLRPGSVLGARAHVGNFVELKNARLGEGSKAGH 8354
Query: 364 LTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAA 423
L+YLGDAE+G N NIGAGTITCNYDGANKF+T +GDDVF+GS+ LVAP+ +G GAT AA
Sbjct: 8353 LSYLGDAELGANCNIGAGTITCNYDGANKFRTELGDDVFIGSNNSLVAPLKIGDGATTAA 8174
Query: 424 GTTVTRNVGENALAISRVPQTQKEGWRRPVKKK 456
G+T+T V LA R Q E W+RP K K
Sbjct: 8173 GSTITHEVPAKNLAFGRARQKNLENWKRPEKIK 8075
>embl|AE004784|AE004784 Pseudomonas aeruginosa PAO1, section 345 of
529 of the complete genome.
Length = 12469
Score = 42.7 bits (99), Expect = 1e-04
Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 10/176 (5%)
Frame = -1
Query: 271 DVEIDTNV------IIEGNVTLGHRVKIGTGCVI-KNSVIGDDCEISP-YTVVEDANLAA 322
D E+D + +IE +G V IG CVI SVIG+ ++P T+ D
Sbjct: 9121 DAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDV---- 8954
Query: 323 ACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGT 382
TIG ++ GA + G F K G K + +G IGD+V IGA T
Sbjct: 8953 --TIGARVSIQSGAVI--GGEGFGFANEK----GVWQK---IAQIGGVTIGDDVEIGANT 8807
Query: 383 ITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAA--GTTVTRNVGENAL 436
D T+IG+ V + + + V +G +AA G + + +G + +
Sbjct: 8806 ---TIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCM 8648
Score = 30.8 bits (68), Expect = 0.44
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 15/145 (10%)
Frame = -3
Query: 309 ISPYTVVE-DANLAAACTIGPFARLRPGAELLEGAHVGNFVEMK-KARLGK--------- 357
I P +++ A LAA +GP++ + E+ EG +G V +K ++GK
Sbjct: 7901 IDPRAIIDPSARLAADVQVGPWSIVGAEVEIGEGTVIGPHVVLKGPTKIGKHNRIYQFSS 7722
Query: 358 -GSKAGHLTYLGDAE---IGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPV 413
G L Y G+ IGD+ I G ++ +T IGD + + +
Sbjct: 7721 VGEDTPDLKYKGEPTRLVIGDHNVIREGVTIHRGTVQDRAETTIGDHNLIMAYAHIGHDS 7542
Query: 414 TVGKGATIAAGTTVTRNVGENALAI 438
+G + T + +V + AI
Sbjct: 7541 VIGNHCILVNNTALAGHVHVDDWAI 7467
>embl|AE004496|AE004496 Pseudomonas aeruginosa PAO1, section 57 of 529
of the complete genome.
Length = 10520
Score = 34.7 bits (78), Expect = 0.031
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Frame = +3
Query: 3 NNAMSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGG 59
+ M +ILAAG+G RM PK L AG +++ + A + G + + G
Sbjct: 1098 SRGMKAMILAAGRGERMRPTTLHTPKPLIEAAGVPLIERQLLALRQAGVDDWVINHAWLG 1277
Query: 60 DLLKQALKDDN-----LNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDV 106
+ ++ L D + + + + E L TG + +A P ++ L+L GDV
Sbjct: 1278 EQIEAYLGDGSRLGGRIAYSPEGEPLETGGGIFRALPLLG-EQPFLLLNGDV 1430
>embl|AE004783|AE004783 Pseudomonas aeruginosa PAO1, section 344 of
529 of the complete genome.
Length = 12207
Score = 32.7 bits (73), Expect = 0.12
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -3
Query: 5 AMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVID 41
A VI AAG G+RM +D PK LAG+ +++ +D
Sbjct: 5383 AFWTVIPAAGVGSRMRADRPKQYLDLAGRTVIERTLD 5273
>embl|AE004749|AE004749 Pseudomonas aeruginosa PAO1, section 310 of 529
of the complete genome.
Length = 16841
Score = 31.6 bits (70), Expect = 0.26
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 53 LVYGH-GGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPF 92
L+ GH G DLL+Q ++ L W QA QL T HA++Q F
Sbjct: 14541 LLAGHFGDDLLRQHVQ--RLAWQHQAVQLATAHAVEQRRAF 14657
>embl|AE004521|AE004521 Pseudomonas aeruginosa PAO1, section 82 of 529
of the complete genome.
Length = 10895
Score = 30.8 bits (68), Expect = 0.44
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 14/133 (10%)
Frame = -2
Query: 16 GTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDDNLNWVL 75
G+ ++ P + G A+ ++ AA LG A L GH D L+QAL+ +L
Sbjct: 9757 GSEIHLAAPGLHRAALGLAVQPALLRAARRLGRAPRLLHLGHAADQLRQALQGILAVLLL 9578
Query: 76 QAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQR--------------LRDAK 121
LG H AA D L++ L+ VE QR L D
Sbjct: 9577 GPVLLGLDHHHAVAA-------DALVVQCQQTLL-VERRQRRGLDVEAQVHRAGDLVDVL 9422
Query: 122 PQGGIGLLTVKLD 134
P G +G ++LD
Sbjct: 9421 PAGALGANGIQLD 9383
>embl|AE004929|AE004929 Pseudomonas aeruginosa PAO1, section 490 of
529 of the complete genome.
Length = 10638
Score = 29.3 bits (64), Expect = 1.3
Identities = 47/217 (21%), Positives = 81/217 (37%), Gaps = 10/217 (4%)
Frame = +1
Query: 9 VILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQA 65
+ILA G GTR++ + K L + K M+ + + G + ++ Q
Sbjct: 2353 IILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQ 2532
Query: 66 LKDDNLNW------VLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRD 119
L D NW +Q G A F +D L+L GD + + L
Sbjct: 2533 LLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVL-GDNLYYGHDFHELLGS 2709
Query: 120 A-KPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANGA 178
A + Q G + + DP YG + + G +E K + TG+ +
Sbjct: 2710 ASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAV---TGLYFYDQQ 2880
Query: 179 DMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAV 215
+ +A+ + +GE ITD+ + G+ V +
Sbjct: 2881 VVD--IARDLKPSPRGELEITDVNRAYLERGQLSVEI 2985
>embl|AE004638|AE004638 Pseudomonas aeruginosa PAO1, section 199 of
529 of the complete genome.
Length = 11886
Score = 29.3 bits (64), Expect = 1.3
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 18/132 (13%)
Frame = +3
Query: 316 EDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGD-AEIGD 374
E A A A + +L GAE+ +G+ + G G+ G +GD I
Sbjct: 2598 ERALEATALLVSSRGKLLSGAEIHPRCKIGSRFILDH---GHGTVIGETAVIGDDCYILG 2768
Query: 375 NVNIGAGTITCNYDGANKFKTI-----------------IGDDVFVGSDTQLVAPVTVGK 417
V +GA I+ N G + TI IGDDVFVG + + VG
Sbjct: 2769 GVVLGATGISANPAG-KRHPTIGSRVQIGAFTRVLGDIAIGDDVFVGPHCVIKDDIPVGS 2945
Query: 418 GATIAAGTTVTR 429
T+ + V R
Sbjct: 2946 VVTLRSELQVIR 2981
>embl|AE004853|AE004853 Pseudomonas aeruginosa PAO1, section 414 of
529 of the complete genome.
Length = 11064
Score = 28.5 bits (62), Expect = 2.2
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Frame = -3
Query: 361 AGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDT---QLVAPVT--- 414
+GH+ + D ++GD + +G GT GA I+G G+ T Q++AP
Sbjct: 910 SGHVFEVADQQVGDGLQVG-GTTVAMAAGAVLALGIVGGGTVAGAGTGAVQVLAPEEELD 734
Query: 415 -VGKGATIAAGTTVTRNVGE 433
V G + GT G+
Sbjct: 733 GVVAGGDVGFGTAQLVQAGQ 674
>embl|AE004764|AE004764 Pseudomonas aeruginosa PAO1, section 325 of
529 of the complete genome.
Length = 10425
Score = 28.5 bits (62), Expect = 2.2
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 39 VIDAANELGAAHVHLVYGHGGDLLK-QALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDE 97
++ A ++L AA +HL GGDL++ QA + D VL A LG Q P D+
Sbjct: 2914 LVGAVHQLLAAGIHLHQAGGGDLVEHQAERVD--QEVLGARHLGRDVGEDQVVPTVQGDQ 3087
Query: 98 DI 99
+
Sbjct: 3088 PV 3093
>embl|AE004659|AE004659 Pseudomonas aeruginosa PAO1, section 220 of
529 of the complete genome.
Length = 12411
Score = 28.5 bits (62), Expect = 2.2
Identities = 23/87 (26%), Positives = 32/87 (36%)
Frame = +2
Query: 318 ANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVN 377
A+ + +GP L+ G E G HVG E ++A H LG E G
Sbjct: 4217 ASAGSGLRVGPAILLQLGIERRAGEHVGEVAERRQAH-----PEDHFQGLGLVETG---- 4369
Query: 378 IGAGTITCNYDGANKFKTIIGDDVFVG 404
GA F+ ++GD G
Sbjct: 4370 -----------GAEGFELLVGDRTAAG 4417
>embl|AE004602|AE004602 Pseudomonas aeruginosa PAO1, section 163 of
529 of the complete genome.
Length = 13243
Score = 28.5 bits (62), Expect = 2.2
Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 11/126 (8%)
Frame = -3
Query: 261 DLRGTLTHGRDV--------EIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPY 312
DLR L G DV +DT V TL V +G G K++ G+ +
Sbjct: 9962 DLRAGLGQGVDVVDVQGVQGRVDTVV----EATLLEEVTVGLGGCGKSAGYGN----AGT 9807
Query: 313 TVVEDANLAAACTIGPFARLRPGAELLEGAHV---GNFVEMKKARLGKGSKAGHLTYLGD 369
V D +LA C + P AEL+EG +V G+ ++ +L +G +
Sbjct: 9806 GQVAD-HLAEGCVLAPHMLYIMDAELIEGNYVLYQGDLSTIELEKLKRGQEQLRWILAWP 9630
Query: 370 AEIGDN 375
EI DN
Sbjct: 9629 LEISDN 9612
>embl|AE004561|AE004561 Pseudomonas aeruginosa PAO1, section 122 of
529 of the complete genome.
Length = 10757
Score = 28.5 bits (62), Expect = 2.2
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -3
Query: 24 PKVLHTLAGKAMVQHVIDAANELGAAHVHLVY---GHGGDLL 62
P+ L L G + HV+ + L HVH+++ GHGG +L
Sbjct: 3288 PEHLRLLLGTRLHVHVLHVFHALHGLHVHVLHVVTGHGGFVL 3163
>embl|AE004857|AE004857 Pseudomonas aeruginosa PAO1, section 418 of
529 of the complete genome.
Length = 10948
Score = 28.1 bits (61), Expect = 2.9
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Frame = +3
Query: 20 YSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHG-GDLLKQALKDDN-------- 70
YS L L L + + +DAA E G VHLV G G G + DD+
Sbjct: 9279 YSGLDDALRGLGDQLLEVDRLDAAREAGVVVVHLVGGLGTGHTHLLGVDDDDVVAGVNVR 9458
Query: 71 --LNWVLQAEQLGT-GHAMQQAAPFFADDEDILM 101
L VL + G G Q DDE + +
Sbjct: 9459 SVLRLVLATQAAGNFGRQTTQGLAGSVDDEPVAL 9560
>embl|AE004480|AE004480 Pseudomonas aeruginosa PAO1, section 41 of 529
of the complete genome.
Length = 10910
Score = 28.1 bits (61), Expect = 2.9
Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 9/135 (6%)
Frame = +3
Query: 50 HVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQ---AAPFFADDEDILMLYGDV 106
HV GG L A+ V + LG A+ Q P A ED L+ V
Sbjct: 5784 HVEQAVDPGGGLFGDAVDALEHLRVFLVQDLGQVTAVVQHHVGVPRLAILEDGLLDAPFV 5963
Query: 107 PLISVETLQRLRDAKPQGGIGLLTVKLDD----PTGYGRITRENG--KVTGIVEHKDATD 160
+ + RDA G G L + +D P +G R+ G + G+ H DAT+
Sbjct: 5964 LFLGLALPGEHRDAGGGDGGGGLVLGGEDVAARPADFGA-QRDQGLDQHAGLDGHVDATE 6140
Query: 161 EQRQIQEINTGILIA 175
+ R Q + GIL A
Sbjct: 6141 DLRAFQRLLAGILAA 6185
>embl|AE004966|AE004966 Pseudomonas aeruginosa PAO1, section 527 of
529 of the complete genome.
Length = 10821
Score = 27.7 bits (60), Expect = 3.7
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Frame = +1
Query: 266 LTHGRDVEIDTNVIIEGNVTLGHRV-----------KIGTGCVIKNSVIGDDCEI 309
+T G I I+ G +G RV ++G GCV++++ + D C++
Sbjct: 5293 VTIGEHSSIAHRSIVHGPCEVGDRVFIGFNSVLFNCRVGDGCVVRHNAVVDGCDL 5457
>embl|AE004606|AE004606 Pseudomonas aeruginosa PAO1, section 167 of
529 of the complete genome.
Length = 10851
Score = 27.7 bits (60), Expect = 3.7
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 17/131 (12%)
Frame = -3
Query: 47 GAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLG---------TGHAMQQAAPFFADDE 97
GA + GH DL+ QA+ D + +A +G G Q D+E
Sbjct: 4360 GALDGQVALGH--DLVDQAILDGFVT-AHKAVTIGIAGNDVQGLAGVVRQDLVQTLLDEE 4190
Query: 98 DILMLYGDVPLISVETLQRLRDAKPQ--------GGIGLLTVKLDDPTGYGRITRENGKV 149
D L + D+ +++ET QRL D P+ GG T + T R+ G+
Sbjct: 4189 DFLGMDLDIRGLALETAQRLVDHHPRMRQAVALAGG----TARKQQGTHAARLADTGGRD 4022
Query: 150 TGIVEHKDATD 160
G+ E D
Sbjct: 4021 VGLDELHGVVD 3989
>embl|AE004446|AE004446 Pseudomonas aeruginosa PAO1, section 7 of 529
of the complete genome.
Length = 19762
Score = 27.7 bits (60), Expect = 3.7
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = -3
Query: 280 IEGNVTLGHRVKIGTGCVIKNSV-IGDDCEISPYTVVEDANLAAACTIGPFARLRPGAEL 338
I VT+GH+V + GC I N V +G + V+ED + A ++ P PG L
Sbjct: 3188 IGDEVTVGHKVLL-HGCSIGNRVLVGMGSIVMDGAVIEDEVILGAGSLVP-----PGKVL 3027
Query: 339 LEG-AHVGNFVEMKKARLGKGSKAGHLTY 366
G +VG+ KKAR + G Y
Sbjct: 3026 ESGFLYVGS--PAKKARPLSDKERGFFAY 2946
>embl|AE004709|AE004709 Pseudomonas aeruginosa PAO1, section 270 of
529 of the complete genome.
Length = 9970
Score = 27.3 bits (59), Expect = 4.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 25 KVLHTLAGKAMVQHVIDAANELGAAHVH 52
+V H AG+A+++ IDA G H+H
Sbjct: 9825 RVAHQQAGQAVLEAAIDAEGVQGVGHLH 9742
>embl|AE004509|AE004509 Pseudomonas aeruginosa PAO1, section 70 of 529
of the complete genome.
Length = 11717
Score = 27.3 bits (59), Expect = 4.9
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +1
Query: 356 GKGSKAGHLTYLGDAEIGDNVNIGAG-----TITCNYDGANKFKTIIGDDVFVGSDTQLV 410
G AGHL G +G++V +GAG + +Y G + + D +D ++
Sbjct: 8590 GFAEAAGHLASAGLVAVGEHVQVGAGGEELRPLAGHYQGVDIVVAVEVLDQLAQADQRVA 8769
Query: 411 APVTVGKGATIAAG 424
P G G + G
Sbjct: 8770 VP---GVGRRVVDG 8802
>embl|AE004835|AE004835 Pseudomonas aeruginosa PAO1, section 396 of
529 of the complete genome.
Length = 10876
Score = 26.9 bits (58), Expect = 6.4
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 19/84 (22%)
Frame = -2
Query: 27 LHTLAGKAMVQHVIDAANELGAAHVHLVY-------------------GHGGDLLKQALK 67
+H LAG M HV+D E H H+V G GGD L +
Sbjct: 7332 VHALAGDRM--HVVDGVAE----HRHVVRPVAVQVQVADGDALEARSAGDGGDRLGALVA 7171
Query: 68 DDNLNWVLQAEQLGTGHAMQQAAP 91
D+ L Q G GH + + P
Sbjct: 7170 DEALQAPAQRLAAGVGHQLARLLP 7099
>embl|AE004790|AE004790 Pseudomonas aeruginosa PAO1, section 351 of
529 of the complete genome.
Length = 11367
Score = 26.9 bits (58), Expect = 6.4
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 320 LAAACTIGPFARLRPG-AELLEGAHVGNFV-EMKKARLG-KGSKAGHLTYLGDAEIGDNV 376
L AA G F LR G A L H+ + + + R G G +AGH +GDA+ GD+V
Sbjct: 1907 LLAAGRHGAFDDLRRGLAAALGENHLRRLLGDHQHRRTGVAGGQAGHDRGIGDAQAGDSV 2086
Query: 377 N 377
+
Sbjct: 2087 H 2089
>embl|AE004482|AE004482 Pseudomonas aeruginosa PAO1, section 43 of 529
of the complete genome.
Length = 10700
Score = 26.9 bits (58), Expect = 6.4
Identities = 22/63 (34%), Positives = 27/63 (42%)
Frame = +2
Query: 302 VIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKA 361
++G D E V D +LAAA I LRPG A VG V + +A A
Sbjct: 3470 ILGPDHEDVGDRAVGDPHLAAAQAIAAVDLLRPGD---HRARVGTVVRLGQAEAADVFAA 3640
Query: 362 GHL 364
G L
Sbjct: 3641 GQL 3649
>embl|AE004947|AE004947 Pseudomonas aeruginosa PAO1, section 508 of
529 of the complete genome.
Length = 11691
Score = 26.6 bits (57), Expect = 8.4
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 33 KAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLG 81
+A+V + L A H H V G GGDL + + WV+ A+Q+G
Sbjct: 5144 QALVAAQAEGLQRLVAKHFHQVAGSGGDLARLV----RVPWVV-AQQVG 5275
>embl|AE004909|AE004909 Pseudomonas aeruginosa PAO1, section 470 of
529 of the complete genome.
Length = 11063
Score = 26.6 bits (57), Expect = 8.4
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 312 YTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAE 371
+ + D +L AC + + G E + G H+ F + + RLG A + +L + E
Sbjct: 5571 FLLAADLHLFQACQLA-----QAGVEDVVGLHLAEFEALHQHRLGLVLGADDVDHLVEVE 5735
Query: 372 IGD 374
GD
Sbjct: 5736 EGD 5744
>embl|AE004720|AE004720 Pseudomonas aeruginosa PAO1, section 281 of 529
of the complete genome.
Length = 12547
Score = 26.6 bits (57), Expect = 8.4
Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 7/154 (4%)
Frame = +1
Query: 117 LRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIAN 176
+R A Q G+G L + +P + + + EH A + R +Q G+ +
Sbjct: 10285 VRQALQQPGVGALAIAARNPQQRQQGIQAQSPARRLAEHMQAVADLRLLQVAEIGVQLRQ 10464
Query: 177 G-----ADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQ 231
A+++ LA T + E + A E R IV + Q L +
Sbjct: 10465 PAVRIVAELQADLAVETVVAQEDENLAAQLFGAARVEQRGIVELVGQALQVAQRAVALGA 10644
Query: 232 LSRLERVYQSEQAEKLLLAGVMLR--DPARFDLR 263
R +V + L G + R D R D+R
Sbjct: 10645 GQRRHQVVDDHRLGAALGLGALPRIVDDERIDVR 10746
>embl|AE004545|AE004545 Pseudomonas aeruginosa PAO1, section 106 of 529
of the complete genome.
Length = 12111
Score = 26.6 bits (57), Expect = 8.4
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +1
Query: 39 VIDAANELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDED 98
V+D + GAA H GGDLL QA + V+ + G G A D D
Sbjct: 11407 VLDLFDVDGAAGRHAALEGGGDLLGQA-----AHGVMDTRRGGGGAAFHGEERLGDGDGD 11571
Query: 99 ILMLYGDVPLISVE 112
+++ GD ++++
Sbjct: 11572 LVIGVGDYGAVALD 11613
Database: pa
Posted date: Nov 9, 2006 6:16 PM
Number of letters in database: 6,296,083
Number of sequences in database: 529
Lambda K H
0.317 0.136 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,441,401
Number of Sequences: 529
Number of extensions: 53833
Number of successful extensions: 430
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 162
length of query: 456
length of database: 2,098,694
effective HSP length: 92
effective length of query: 364
effective length of database: 2,050,026
effective search space: 746209464
effective search space used: 746209464
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)